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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1467
total RNA-seq
1320
ChIP-seq
456
ATAC-seq
305
single cell RNA-seq
131
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
53
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
1
DNA sequencing
Date released
41
May, 2022
12
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
1
August, 2021
Available data
41
zippedFastqFolder
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
6
tsv
1
vcf
Organism
76
Homo sapiens
Biosample type
47
primary cell
27
tissue
2
cell line
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
6
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
29
AMP
Genome assembly (visualization)
17
GRCh38
Lab
47
Klaus Kaestner, Upenn
28
AMP-T2D consortium
1
Bing Ren, UCSD
files.file_type!
ibed
organ_slims!
kidney
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
76 results
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WGBS
whole genome sequencing assay
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
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cell line
HepG2
1
1
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