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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
278
ATAC-seq
227
single cell RNA-seq
152
total RNA-seq
87
RNA microarray
57
snATAC-seq
56
pCHi-C
50
WGBS
31
Hi-C
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
4
DNase-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
50
DNA methylation
Date released
41
May, 2022
5
August, 2017
4
July, 2019
Available data
41
zippedFastqFolder
fastq
6
tsv
1
bam
Organism
50
Homo sapiens
Biosample type
41
primary cell
9
tissue
Organ
41
epithelium
41
pancreas
3
adipose tissue
3
connective tissue
3
liver
2
heart
1
blood vessel
1
vasculature
Project
41
HPAP
9
AMP
Genome assembly (visualization)
GRCh38
Lab
41
Klaus Kaestner, Upenn
9
AMP-T2D consortium
assembly!
GRCh38
assembly!!
GRCh38
files.file_type!
fastq
month_released!
December, 2017
BIOSAMPLE
ASSAY
50 results
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WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
liver
2
aorta
1
right lobe of liver
1
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