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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
599
ChIP-seq
257
ATAC-seq
250
total RNA-seq
211
single cell RNA-seq
87
RNA microarray
57
pCHi-C
55
snATAC-seq
32
Hi-C
21
RRBS
17
WGBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
DNA methylation
Date released
7
August, 2017
6
February, 2021
4
July, 2019
Available data
zippedFastqFolder
8
fastq
6
tsv
1
bam
Organism
17
Homo sapiens
Biosample type
11
tissue
6
primary cell
Organ
6
epithelium
6
pancreas
4
adipose tissue
4
connective tissue
4
liver
2
heart
1
blood vessel
1
vasculature
Project
11
AMP
6
HPAP
Genome assembly (visualization)
GRCh38
Lab
11
AMP-T2D consortium
6
Klaus Kaestner, Upenn
assembly!
GRCh38
files.file_type!
zippedFastqFolder
organ_slims!
blood
organ_slims!!
blood
BIOSAMPLE
ASSAY
17 results
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WGBS
tissue
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
aorta
1
+ See 1 more…
primary cell
pancreatic alpha cell
6
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