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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1715
ChIP-seq
1053
total RNA-seq
506
ATAC-seq
356
single cell RNA-seq
203
DNase-seq
86
RNA microarray
74
snATAC-seq
54
WGBS
52
pCHi-C
32
Hi-C
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
54
DNA methylation
Date released
41
May, 2022
6
February, 2021
4
July, 2019
3
August, 2017
Available data
41
zippedFastqFolder
16
bam
15
bed bedMethyl
bigBed bedMethyl
15
bigWig
14
fastq
6
tsv
Organism
54
Homo sapiens
Biosample type
47
primary cell
7
tissue
Organ
47
epithelium
47
pancreas
4
adipose tissue
connective tissue
4
liver
2
heart
1
blood vessel
1
vasculature
Project
47
HPAP
7
AMP
Lab
47
Klaus Kaestner, Upenn
7
AMP-T2D consortium
audit.WARNING.category!
inconsistent assembly
award.project!
LungMap
files.file_type!
bigBed bedMethyl
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
54 results
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Clear Filters
WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
liver
3
heart left ventricle
2
aorta
1
right lobe of liver
1
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