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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1772
ChIP-seq
1374
total RNA-seq
436
ATAC-seq
275
single cell RNA-seq
203
DNase-seq
87
RNA microarray
53
pCHi-C
36
snATAC-seq
26
WGBS
21
RRBS
18
small RNA-seq
11
Hi-C
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
26
DNA methylation
Date released
10
July, 2019
9
August, 2017
7
November, 2018
Available data
16
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
11
fastq
Organism
26
Homo sapiens
Biosample type
25
tissue
1
cell line
Organ
8
heart
6
adipose tissue
6
connective tissue
5
liver
4
pancreas
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
HPAP
26
AMP
Genome assembly (visualization)
16
GRCh38
Lab
26
AMP-T2D consortium
award.project!
HPAP
files.file_type!
bedpe bed3+
month_released!
August, 2018
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
26 results
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WGBS
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
+ See 7 more…
cell line
HepG2
1
See all biosamples
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