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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1812
ChIP-seq
1429
total RNA-seq
480
ATAC-seq
283
single cell RNA-seq
178
DNase-seq
87
RNA microarray
55
pCHi-C
35
snATAC-seq
25
Hi-C
25
WGBS
16
RRBS
16
small RNA-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
25
DNA methylation
Date released
11
July, 2019
9
August, 2017
5
November, 2018
Available data
15
bam
14
bed bedMethyl
14
bigBed bedMethyl
14
bigWig
9
fastq
Organism
25
Homo sapiens
Biosample type
24
tissue
1
cell line
Organ
8
heart
6
adipose tissue
6
connective tissue
5
liver
4
pancreas
2
blood vessel
spleen
2
vasculature
1
limb
musculature of body
Project
HPAP
25
AMP
Genome assembly (visualization)
14
GRCh38
Lab
25
AMP-T2D consortium
award.project!
HPAP
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
musculature of body
spleen
BIOSAMPLE
ASSAY
25 results
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WGBS
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 6 more…
cell line
HepG2
1
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