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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1387
ChIP-seq
1322
total RNA-seq
453
ATAC-seq
284
single cell RNA-seq
210
DNase-seq
87
RNA microarray
48
pCHi-C
36
snATAC-seq
27
WGBS
21
RRBS
18
small RNA-seq
12
Hi-C
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
27
DNA methylation
Date released
12
July, 2019
9
August, 2017
6
November, 2018
Available data
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
10
fastq
Organism
27
Homo sapiens
Biosample type
27
tissue
cell line
Organ
8
heart
6
adipose tissue
6
connective tissue
4
liver
4
pancreas
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
27
AMP
Genome assembly (visualization)
16
GRCh38
Lab
Klaus Kaestner, Upenn
27
AMP-T2D consortium
biosample_type!
cell line
files.file_type!
bedpe bed3+
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
27 results
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WGBS
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
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