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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1218
ChIP-seq
1007
total RNA-seq
458
ATAC-seq
363
single cell RNA-seq
197
DNase-seq
86
RNA microarray
84
snATAC-seq
66
WGBS
48
pCHi-C
23
Hi-C
20
RRBS
15
small RNA-seq
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
66
DNA methylation
Date released
41
May, 2022
10
July, 2019
6
February, 2021
6
November, 2018
3
August, 2017
Available data
41
zippedFastqFolder
13
bam
13
bed bedMethyl
13
bigBed bedMethyl
13
bigWig
13
fastq
6
tsv
Organism
66
Homo sapiens
Biosample type
47
primary cell
19
tissue
cell line
Organ
51
pancreas
47
epithelium
8
heart
adipose tissue
6
connective tissue
4
liver
2
blood vessel
2
spleen
vasculature
1
limb
1
musculature of body
Project
47
HPAP
19
AMP
Genome assembly (visualization)
13
GRCh38
Lab
47
Klaus Kaestner, Upenn
19
AMP-T2D consortium
biosample_type!
cell line
files.file_type!
hdf5
organ_slims!
adipose tissue
vasculature
BIOSAMPLE
ASSAY
66 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
liver
3
body of pancreas
2
heart right ventricle
2
pancreas
2
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