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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1301
total RNA-seq
807
ChIP-seq
485
ATAC-seq
366
single cell RNA-seq
137
DNase-seq
87
RNA microarray
84
snATAC-seq
64
WGBS
49
pCHi-C
23
Hi-C
14
small RNA-seq
13
RRBS
5
GRO-seq
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
64
DNA methylation
Date released
41
May, 2022
11
July, 2019
August, 2017
6
February, 2021
6
November, 2018
Available data
41
zippedFastqFolder
14
bam
13
bed bedMethyl
13
bigBed bedMethyl
13
bigWig
12
fastq
6
tsv
Organism
64
Homo sapiens
Biosample type
47
primary cell
17
tissue
cell line
Organ
51
pancreas
47
epithelium
8
heart
2
blood vessel
2
spleen
2
vasculature
limb
1
liver
1
musculature of body
Project
47
HPAP
17
AMP
Genome assembly (visualization)
13
GRCh38
Lab
47
Klaus Kaestner, Upenn
17
AMP-T2D consortium
biosample_type!
cell line
month_released!
August, 2017
organ_slims!
brain
limb
BIOSAMPLE
ASSAY
64 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
aorta
2
body of pancreas
2
heart right ventricle
2
pancreas
2
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