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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
297
ATAC-seq
292
ChIP-seq
229
single cell RNA-seq
224
total RNA-seq
87
RNA microarray
62
snATAC-seq
56
pCHi-C
34
Hi-C
21
RRBS
16
WGBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
16
DNA methylation
Date released
May, 2022
7
August, 2017
6
February, 2021
3
July, 2019
Available data
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
6
tsv
Organism
16
Homo sapiens
Biosample type
10
tissue
6
primary cell
Organ
6
epithelium
6
pancreas
4
adipose tissue
4
connective tissue
4
liver
2
heart
Project
10
AMP
6
HPAP
Lab
10
AMP-T2D consortium
6
Klaus Kaestner, Upenn
files.file_type!
bam
month_released!
May, 2022
organ_slims!
lymph node
nerve
BIOSAMPLE
ASSAY
16 results
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WGBS
tissue
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
right lobe of liver
1
primary cell
pancreatic alpha cell
6
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