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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1769
ChIP-seq
1466
total RNA-seq
446
ATAC-seq
311
single cell RNA-seq
201
DNase-seq
87
RNA microarray
63
snATAC-seq
56
pCHi-C
29
Hi-C
18
small RNA-seq
16
WGBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
16
DNA methylation
Date released
7
August, 2017
6
February, 2021
3
July, 2019
Available data
zippedFastqFolder
17
fastq
16
bam
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
6
tsv
Organism
16
Homo sapiens
Biosample type
10
tissue
6
primary cell
Organ
6
epithelium
6
pancreas
4
adipose tissue
4
connective tissue
4
liver
2
heart
1
blood vessel
vasculature
Project
10
AMP
6
HPAP
Lab
10
AMP-T2D consortium
6
Klaus Kaestner, Upenn
files.file_type!
bed bedMethyl
zippedFastqFolder
files.file_type!!
bed bedMethyl
organ_slims!
vasculature
BIOSAMPLE
ASSAY
16 results
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WGBS
tissue
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
right lobe of liver
1
primary cell
pancreatic alpha cell
6
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