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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1283
total RNA-seq
948
ChIP-seq
462
ATAC-seq
235
single cell RNA-seq
164
DNase-seq
87
RNA microarray
57
WGBS
57
snATAC-seq
56
pCHi-C
29
Hi-C
18
small RNA-seq
17
RRBS
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
57
DNA methylation
Date released
41
May, 2022
11
July, 2019
5
August, 2017
Available data
41
zippedFastqFolder
17
bam
fastq
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
6
tsv
Organism
57
Homo sapiens
Biosample type
41
primary cell
16
tissue
Organ
41
epithelium
41
pancreas
8
heart
3
adipose tissue
3
connective tissue
3
liver
2
blood vessel
2
vasculature
limb
1
musculature of body
Project
41
HPAP
16
AMP
Genome assembly (visualization)
7
GRCh38
Lab
41
Klaus Kaestner, Upenn
16
AMP-T2D consortium
files.file_type!
fastq
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
limb
BIOSAMPLE
ASSAY
57 results
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WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
subcutaneous abdominal adipose tissue
3
aorta
2
heart right ventricle
2
liver
2
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