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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1290total RNA-seq
  • 1014ChIP-seq
  • 470ATAC-seq
  • 235single cell RNA-seq
  • 200DNase-seq
  • 87RNA microarray
  • 58WGBS
  • 57snATAC-seq
  • 56pCHi-C
  • 33Hi-C
  • 18small RNA-seq
  • 17RRBS
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 58DNA methylation
Date released
  • 41May, 2022
  • 12July, 2019
  • 5August, 2017
Available data
  • 41zippedFastqFolder
  • 18bam
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 17bigWig
  • fastq
  • 6tsv
Organism
  • 58Homo sapiens
Biosample type
  • 41primary cell
  • 17tissue
Organ
  • 41epithelium
  • 41pancreas
  • 8heart
  • 3adipose tissue
  • 3connective tissue
  • 3liver
  • 2blood vessel
  • 2vasculature
  • 1limb
  • 1musculature of body
Project
  • 41HPAP
  • 17AMP
Genome assembly (visualization)
  • 8GRCh38
Lab
  • 41Klaus Kaestner, Upenn
  • 17AMP-T2D consortium
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

58 results

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Clear Filters
WGBS
primary cell
pancreatic alpha cell25
pancreatic beta cell16
tissue
heart left ventricle4
subcutaneous abdominal adipose tissue3
aorta2
heart right ventricle2
liver2
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