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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 1527total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 75DNA methylation
Date released
  • 41May, 2022
  • 12July, 2019
  • 9August, 2017
  • 7November, 2018
  • 6February, 2021
Available data
  • 41zippedFastqFolder
  • 18bam
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 17bigWig
  • 17fastq
  • 6tsv
Organism
  • 75Homo sapiens
Biosample type
  • 47primary cell
  • 27tissue
  • 1cell line
Organ
  • 51pancreas
  • 47epithelium
  • 8heart
  • 6adipose tissue
  • 6connective tissue
  • 5liver
  • 2blood vessel
  • 2spleen
  • 2vasculature
  • 1limb
  • 1musculature of body
Project
  • 47HPAP
  • 28AMP
Genome assembly (visualization)
  • 17GRCh38
Lab
  • 47Klaus Kaestner, Upenn
  • 28AMP-T2D consortium
files.file_type!
  • tbi
BIOSAMPLE
ASSAY

75 results

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WGBS
primary cell
pancreatic alpha cell31
pancreatic beta cell16
tissue
heart left ventricle4
adipose tissue3
liver3
subcutaneous abdominal adipose tissue3
aorta2
body of pancreas2
heart right ventricle2
pancreas2
spleen2
heart1
muscle of leg1
right cardiac atrium1
right lobe of liver1
cell line
HepG21
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