Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1304
ChIP-seq
486
ATAC-seq
206
DNase-seq
192
total RNA-seq
157
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
64
WGBS
30
Hi-C
25
pCHi-C
19
RRBS
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
64
DNA methylation
Date released
41
May, 2022
11
July, 2019
6
August, 2017
6
November, 2018
Available data
41
zippedFastqFolder
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
15
fastq
tsv
Organism
64
Homo sapiens
Biosample type
41
primary cell
23
tissue
Organ
45
pancreas
41
epithelium
8
heart
6
adipose tissue
6
connective tissue
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
41
HPAP
23
AMP
Genome assembly (visualization)
16
GRCh38
Lab
41
Klaus Kaestner, Upenn
23
AMP-T2D consortium
files.file_type!
tsv
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
October, 2017
organ_slims!
liver
BIOSAMPLE
ASSAY
64 results
search-icon
table-tab-icon
Clear Filters
WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
subcutaneous abdominal adipose tissue
3
aorta
2
body of pancreas
2
+ See 6 more…
See all biosamples
Download