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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1738ChIP-seq
  • 1490total RNA-seq
  • 505ATAC-seq
  • 341single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 64WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 64DNA methylation
Date released
  • 41May, 2022
  • 12July, 2019
  • 6November, 2018
  • 5August, 2017
Available data
  • 41zippedFastqFolder
  • 15bam
  • 14bed bedMethyl
  • 14bigBed bedMethyl
  • 14bigWig
  • 6fastq
Organism
  • 64Homo sapiens
Biosample type
  • 41primary cell
  • 22tissue
  • 1cell line
Organ
  • 44pancreas
  • 41epithelium
  • 8heart
  • 4liver
  • 3adipose tissue
  • 3connective tissue
  • 2blood vessel
  • 2spleen
  • 2vasculature
  • 1limb
  • 1musculature of body
Project
  • 41HPAP
  • 23AMP
Genome assembly (visualization)
  • 14GRCh38
Lab
  • 41Klaus Kaestner, Upenn
  • 23AMP-T2D consortium
files.read_length!
  • 100
BIOSAMPLE
ASSAY

64 results

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Clear Filters
WGBS
primary cell
pancreatic alpha cell25
pancreatic beta cell16
tissue
heart left ventricle4
subcutaneous abdominal adipose tissue3
aorta2
body of pancreas2
heart right ventricle2
cell line
HepG21
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