Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1738
ChIP-seq
1490
total RNA-seq
505
ATAC-seq
341
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
64
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
64
DNA methylation
Date released
41
May, 2022
12
July, 2019
6
November, 2018
5
August, 2017
Available data
41
zippedFastqFolder
15
bam
14
bed bedMethyl
14
bigBed bedMethyl
14
bigWig
6
fastq
Organism
64
Homo sapiens
Biosample type
41
primary cell
22
tissue
1
cell line
Organ
44
pancreas
41
epithelium
8
heart
4
liver
3
adipose tissue
3
connective tissue
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
41
HPAP
23
AMP
Genome assembly (visualization)
14
GRCh38
Lab
41
Klaus Kaestner, Upenn
23
AMP-T2D consortium
files.read_length!
100
BIOSAMPLE
ASSAY
64 results
search-icon
table-tab-icon
Clear Filters
WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
subcutaneous abdominal adipose tissue
3
aorta
2
body of pancreas
2
heart right ventricle
2
+ See 7 more…
cell line
HepG2
1
See all biosamples
Download