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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1420
total RNA-seq
1175
ChIP-seq
530
ATAC-seq
267
single cell RNA-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
69
WGBS
57
pCHi-C
34
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
69
DNA methylation
Date released
41
May, 2022
12
July, 2019
6
February, 2021
5
August, 2017
5
November, 2018
Available data
41
zippedFastqFolder
14
bam
13
bed bedMethyl
13
bigBed bedMethyl
13
bigWig
11
fastq
6
tsv
Organism
69
Homo sapiens
Biosample type
47
primary cell
21
tissue
1
cell line
Organ
49
pancreas
47
epithelium
8
heart
4
liver
3
adipose tissue
3
connective tissue
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
22
AMP
Genome assembly (visualization)
13
GRCh38
Lab
47
Klaus Kaestner, Upenn
22
AMP-T2D consortium
files.run_type!
single-ended
BIOSAMPLE
ASSAY
69 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
subcutaneous abdominal adipose tissue
3
aorta
2
body of pancreas
2
heart right ventricle
2
+ See 6 more…
cell line
HepG2
1
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