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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1793
ChIP-seq
982
total RNA-seq
508
ATAC-seq
350
single cell RNA-seq
203
DNase-seq
62
WGBS
57
snATAC-seq
55
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
62
DNA methylation
Date released
41
May, 2022
12
July, 2019
9
August, 2017
November, 2018
February, 2021
Available data
41
zippedFastqFolder
11
bam
10
bed bedMethyl
10
bigBed bedMethyl
10
bigWig
4
fastq
Organism
62
Homo sapiens
Biosample type
41
primary cell
21
tissue
Organ
41
epithelium
41
pancreas
8
heart
6
adipose tissue
6
connective tissue
4
liver
2
blood vessel
2
vasculature
1
limb
1
musculature of body
Project
41
HPAP
21
AMP
Genome assembly (visualization)
10
GRCh38
Lab
41
Klaus Kaestner, Upenn
21
AMP-T2D consortium
lab.title!
Maike Sander, UCSD
month_released!
February, 2021
November, 2018
BIOSAMPLE
ASSAY
62 results
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WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
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