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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1690
ChIP-seq
1520
total RNA-seq
522
ATAC-seq
319
single cell RNA-seq
167
DNase-seq
87
RNA microarray
76
snATAC-seq
67
WGBS
57
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
67
DNA methylation
Date released
41
May, 2022
11
July, 2019
9
August, 2017
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
10
bam
10
fastq
9
bed bedMethyl
9
bigBed bedMethyl
9
bigWig
6
tsv
Organism
67
Homo sapiens
Biosample type
47
primary cell
20
tissue
Organ
47
epithelium
47
pancreas
8
heart
6
adipose tissue
6
connective tissue
4
liver
2
blood vessel
2
vasculature
limb
1
musculature of body
Project
47
HPAP
20
AMP
Genome assembly (visualization)
9
GRCh38
Lab
47
Klaus Kaestner, Upenn
20
AMP-T2D consortium
month_released!
April, 2018
November, 2018
organ_slims!
bodily fluid
limb
BIOSAMPLE
ASSAY
67 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
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