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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1791
ChIP-seq
906
total RNA-seq
430
ATAC-seq
252
single cell RNA-seq
130
DNase-seq
67
WGBS
52
pCHi-C
51
snATAC-seq
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
67
DNA methylation
Date released
41
May, 2022
12
July, 2019
9
August, 2017
February, 2021
5
November, 2018
Available data
41
zippedFastqFolder
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
9
fastq
Organism
67
Homo sapiens
Biosample type
41
primary cell
25
tissue
1
cell line
Organ
45
pancreas
41
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
spleen
2
vasculature
1
limb
1
musculature of body
Project
41
HPAP
26
AMP
Genome assembly (visualization)
15
GRCh38
Lab
41
Klaus Kaestner, Upenn
26
AMP-T2D consortium
month_released!
February, 2021
September, 2020
organ_slims!
kidney
spleen
BIOSAMPLE
ASSAY
67 results
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WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 7 more…
cell line
HepG2
1
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