Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1851
ChIP-seq
1527
total RNA-seq
530
ATAC-seq
369
single cell RNA-seq
211
DNase-seq
87
RNA microarray
85
snATAC-seq
73
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
73
DNA methylation
Date released
41
May, 2022
12
July, 2019
9
August, 2017
6
February, 2021
5
November, 2018
Available data
41
zippedFastqFolder
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
15
fastq
6
tsv
Organism
73
Homo sapiens
Biosample type
47
primary cell
25
tissue
1
cell line
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
26
AMP
Genome assembly (visualization)
15
GRCh38
Lab
47
Klaus Kaestner, Upenn
26
AMP-T2D consortium
organ_slims!
spleen
BIOSAMPLE
ASSAY
73 results
search-icon
table-tab-icon
Clear Filters
WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 7 more…
cell line
HepG2
1
See all biosamples
Download