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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1476total RNA-seq
  • 1297ChIP-seq
  • 441ATAC-seq
  • 363single cell RNA-seq
  • 190DNase-seq
  • 87RNA microarray
  • 77snATAC-seq
  • 67WGBS
  • 36pCHi-C
  • 24Hi-C
  • 18small RNA-seq
  • 5GRO-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 67DNA methylation
Date released
  • 41May, 2022
  • 11July, 2019
  • 9August, 2017
  • 6November, 2018
Available data
  • 41zippedFastqFolder
  • 17bam
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 16bigWig
  • 10fastq
Organism
  • 67Homo sapiens
Biosample type
  • 41primary cell
  • 26tissue
Organ
  • 45pancreas
  • 41epithelium
  • 8heart
  • 6adipose tissue
  • 6connective tissue
  • 3liver
  • 2blood vessel
  • 2spleen
  • 2vasculature
  • 1limb
  • 1musculature of body
Project
  • 41HPAP
  • 26AMP
Genome assembly (visualization)
  • 16GRCh38
Lab
  • 41Klaus Kaestner, Upenn
  • 26AMP-T2D consortium
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

67 results

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Clear Filters
WGBS
primary cell
pancreatic alpha cell25
pancreatic beta cell16
tissue
heart left ventricle4
adipose tissue3
liver3
subcutaneous abdominal adipose tissue3
aorta2
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