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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
969
total RNA-seq
907
ChIP-seq
248
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
969
Transcription
Date released
386
February, 2021
143
May, 2020
120
July, 2018
89
August, 2017
50
August, 2021
40
May, 2021
31
July, 2019
29
March, 2020
26
May, 2022
26
October, 2019
25
February, 2020
19
November, 2019
9
February, 2023
1
May, 2023
Available data
887
tsv
843
bam
837
bigWig
97
fastq
55
txt
Organism
994
Homo sapiens
Biosample type
994
tissue
263
primary cell
141
in vitro differentiated cells
119
cell line
4
stem cell
Organ
456
connective tissue
398
adipose tissue
284
pancreas
171
liver
bone element
50
kidney
23
eye
19
brain
18
heart
8
blood vessel
8
vasculature
7
limb
6
musculature of body
5
nerve
4
skeleton
2
artery
2
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
986
AMP
8
T1D
Genome assembly (visualization)
838
GRCh38
838
hg19
Lab
911
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
bone element
BIOSAMPLE
ASSAY
994 results
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total RNA-seq
pCHi-C
tissue
adipose tissue
382
1
islet of Langerhans
292
4
liver
167
1
kidney
49
subcutaneous adipose tissue
7
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