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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1558
ChIP-seq
1150
total RNA-seq
289
ATAC-seq
180
DNase-seq
133
single cell RNA-seq
32
pCHi-C
28
WGBS
28
snATAC-seq
19
Hi-C
16
small RNA-seq
11
RRBS
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
24
March, 2020
4
October, 2019
1
August, 2018
1
February, 2021
1
May, 2020
1
May, 2021
Available data
25
tsv
1
bed bed3+
1
bedpe bed3+
1
fastq
Organism
32
Homo sapiens
Biosample type
23
tissue
primary cell
4
cell line
3
stem cell
2
in vitro differentiated cells
Organ
4
eye
3
heart
3
liver
2
adipose tissue
2
brain
2
connective tissue
2
intestine
2
thymus
1
adrenal gland
1
blood vessel
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
musculature of body
1
ovary
1
pancreas
1
small intestine
1
spleen
1
vasculature
Project
31
AMP
1
T1D
Genome assembly (visualization)
1
hg19
Lab
31
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
biosample_type!
primary cell
lab.title!
KPMP
organ_slims!
skeleton
BIOSAMPLE
ASSAY
32 results
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pCHi-C
tissue
islet of Langerhans
4
thymus
2
Ammon's horn
1
adipose tissue
1
adrenal gland
1
+ See 14 more…
cell line
HepG2
2
MCF-7
1
fibroblast cell line
1
stem cell
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
in vitro differentiated cells
embryonic stem cell
1
white fat cell
1
See all biosamples
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