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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1414total RNA-seq
  • 1387ChIP-seq
  • 502ATAC-seq
  • 369single cell RNA-seq
  • 210DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 74WGBS
  • 51pCHi-C
  • 30Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
Date released
  • 28March, 2020
  • 17May, 2021
  • 4October, 2019
  • 1August, 2018
  • 1February, 2021
Available data
  • 26tsv
  • 3bedpe bed3+
  • 2ibed
  • 1bam
  • 1bed bed3+
  • 1fastq
Organism
  • 51Homo sapiens
Biosample type
  • 25tissue
  • 17primary cell
  • cell line
  • 5in vitro differentiated cells
  • 4stem cell
Organ
  • 5connective tissue
  • 4eye
  • 3heart
  • 2adipose tissue
  • 2brain
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1blood vessel
  • 1bone element
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1liver
  • 1lung
  • 1musculature of body
  • 1ovary
  • 1pancreas
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1urinary bladder
  • 1vasculature
Project
  • 34AMP
  • 17T1D
Genome assembly (visualization)
  • 3hg19
Lab
  • 34AMP-T2D consortium
  • 17Kyle Gaulton, UCSD
Audit category:
  • 7inconsistent ontology term
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

51 results

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Clear Filters
pCHi-C
tissue
islet of Langerhans4
thymus2
Ammon's horn1
adipose tissue1
adrenal gland1
primary cell
CD4-positive, alpha-beta T cell2
B cell1
CD8-positive, alpha-beta T cell1
activated CD4-positive, alpha-beta T cell1
adult endothelial progenitor cell1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
embryonic stem cell1
lymphocyte of B lineage (iPSC)1
white fat cell1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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