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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 964ChIP-seq
  • 496total RNA-seq
  • 271ATAC-seq
  • 189single cell RNA-seq
  • 56snATAC-seq
  • 48WGBS
  • 34DNase-seq
  • 32pCHi-C
  • 18Hi-C
  • 10RRBS
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 2small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Date released
  • 16May, 2021
  • 12March, 2020
  • 2February, 2021
  • 1August, 2018
  • 1May, 2020
Available data
  • 11tsv
  • 3bedpe bed3+
  • 2bed bed3+
  • 2ibed
  • 1bam
  • 1fastq
Organism
  • 32Homo sapiens
Biosample type
  • tissue
  • 17primary cell
  • 6cell line
  • 5in vitro differentiated cells
  • 4stem cell
Organ
  • 4connective tissue
  • 2kidney
  • 2liver
  • 1adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
Project
  • 16AMP
  • 16T1D
Genome assembly (visualization)
  • 4hg19
Lab
  • 16AMP-T2D consortium
  • 16Kyle Gaulton, UCSD
Audit category:
  • 7inconsistent ontology term
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

32 results

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Clear Filters
pCHi-C
primary cell
CD4-positive, alpha-beta T cell2
B cell1
CD8-positive, alpha-beta T cell1
activated CD4-positive, alpha-beta T cell1
adult endothelial progenitor cell1
cell line
HepG22
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
fibroblast cell line1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
embryonic stem cell1
lymphocyte of B lineage (iPSC)1
white fat cell1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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