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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 1527total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 55pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Date released
  • 30March, 2020
  • 17May, 2021
  • 4October, 2019
  • 2February, 2021
  • 1August, 2018
  • 1May, 2020
Available data
  • 31tsv
  • 3bedpe bed3+
  • 2bed bed3+
  • ibed
  • 1bam
  • 1fastq
Organism
  • 55Homo sapiens
Biosample type
  • 25tissue
  • 17primary cell
  • 6cell line
  • 4stem cell
  • 3in vitro differentiated cells
Organ
  • 5connective tissue
  • 4eye
  • 3heart
  • 3liver
  • 2adipose tissue
  • 2brain
  • 2intestine
  • 2kidney
  • 2thymus
  • 1adrenal gland
  • 1blood vessel
  • 1bone element
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1musculature of body
  • 1ovary
  • 1pancreas
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1urinary bladder
  • 1vasculature
Project
  • 38AMP
  • 17T1D
Genome assembly (visualization)
  • 2hg19
Lab
  • 38AMP-T2D consortium
  • 17Kyle Gaulton, UCSD
Audit category:
  • 7inconsistent ontology term
files.file_type!
  • ibed
BIOSAMPLE
ASSAY

55 results

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Clear Filters
pCHi-C
tissue
islet of Langerhans4
thymus2
Ammon's horn1
adipose tissue1
adrenal gland1
primary cell
CD4-positive, alpha-beta T cell2
B cell1
CD8-positive, alpha-beta T cell1
activated CD4-positive, alpha-beta T cell1
adult endothelial progenitor cell1
cell line
HepG22
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
fibroblast cell line1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)1
embryonic stem cell1
white fat cell1
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