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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1690ChIP-seq
  • 1337total RNA-seq
  • 426ATAC-seq
  • 280single cell RNA-seq
  • 185DNase-seq
  • 87RNA microarray
  • 79snATAC-seq
  • 75WGBS
  • 29pCHi-C
  • 25Hi-C
  • 21RRBS
  • 7small RNA-seq
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2FAIRE-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Date released
  • 13May, 2021
  • 9March, 2020
  • 4October, 2019
  • 1August, 2018
  • 1February, 2021
  • 1May, 2020
Available data
  • 8tsv
  • 3bedpe bed3+
  • 2ibed
  • 1bed bed3+
  • 1fastq
Organism
  • 29Homo sapiens
Biosample type
  • 12primary cell
  • 6cell line
  • 5tissue
  • 3in vitro differentiated cells
  • 3stem cell
Organ
  • 4eye
  • 2connective tissue
  • 2kidney
  • 2liver
  • 1adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1thymus
Project
  • 16AMP
  • 13T1D
Genome assembly (visualization)
  • 3hg19
Lab
  • 16AMP-T2D consortium
  • 13Kyle Gaulton, UCSD
Audit category:
  • 5inconsistent ontology term
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

29 results

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Clear Filters
pCHi-C
primary cell
CD4-positive, alpha-beta T cell2
B cell1
activated CD4-positive, alpha-beta T cell1
adult endothelial progenitor cell1
erythroblast1
cell line
HepG22
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
fibroblast cell line1
tissue
islet of Langerhans4
thymus1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
white fat cell1
stem cell
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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