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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1476total RNA-seq
  • 1297ChIP-seq
  • 441ATAC-seq
  • 363single cell RNA-seq
  • 190DNase-seq
  • 87RNA microarray
  • 78snATAC-seq
  • 67WGBS
  • 36pCHi-C
  • 24Hi-C
  • 18small RNA-seq
  • 5GRO-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Date released
  • 26March, 2020
  • 4May, 2021
  • 4October, 2019
  • 1August, 2018
  • 1February, 2021
Available data
  • 26tsv
  • 1bam
  • 1bed bed3+
  • 1bedpe bed3+
  • 1fastq
Organism
  • 36Homo sapiens
Biosample type
  • 24tissue
  • 5primary cell
  • 4stem cell
  • 3in vitro differentiated cells
Organ
  • 4connective tissue
  • 4eye
  • 3heart
  • 2adipose tissue
  • 2brain
  • 2intestine
  • 1adrenal gland
  • 1blood vessel
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1liver
  • 1lung
  • 1musculature of body
  • 1ovary
  • 1pancreas
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vasculature
Project
  • 32AMP
  • 4T1D
Genome assembly (visualization)
  • 1hg19
Lab
  • 32AMP-T2D consortium
  • 4Kyle Gaulton, UCSD
Audit category:
  • 4inconsistent ontology term
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

36 results

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Clear Filters
pCHi-C
tissue
islet of Langerhans4
Ammon's horn1
adipose tissue1
adrenal gland1
aorta1
primary cell
CD8-positive, alpha-beta T cell1
alternatively activated macrophage1
macrophage1
naive thymus-derived CD4-positive, alpha-beta T cell1
osteoblast1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)1
embryonic stem cell1
white fat cell1
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