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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 755ChIP-seq
  • 241total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Date released
  • 29March, 2020
  • 17May, 2021
  • 2February, 2021
  • 1May, 2020
Available data
  • 28tsv
  • 2bed bed3+
  • 2bedpe bed3+
  • 2ibed
  • 1bam
Organism
  • 49Homo sapiens
Biosample type
  • 21tissue
  • 17primary cell
  • 6cell line
  • 4in vitro differentiated cells
  • 1stem cell
Organ
  • 4connective tissue
  • 3heart
  • 3liver
  • 2brain
  • 2intestine
  • 2kidney
  • 2thymus
  • 1adipose tissue
  • 1adrenal gland
  • 1blood vessel
  • 1bone element
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1musculature of body
  • 1ovary
  • 1pancreas
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1urinary bladder
  • 1vasculature
Project
  • 32AMP
  • 17T1D
Genome assembly (visualization)
  • 4hg19
Lab
  • 32AMP-T2D consortium
  • 17Kyle Gaulton, UCSD
Audit category:
  • 9inconsistent ontology term
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

49 results

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Clear Filters
pCHi-C
tissue
thymus2
Ammon's horn1
adipose tissue1
adrenal gland1
aorta1
primary cell
CD4-positive, alpha-beta T cell2
B cell1
CD8-positive, alpha-beta T cell1
activated CD4-positive, alpha-beta T cell1
adult endothelial progenitor cell1
cell line
HepG22
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
fibroblast cell line1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
embryonic stem cell1
lymphocyte of B lineage (iPSC)1
stem cell
mesenchymal stem cell1
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