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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 1527total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Date released
  • 32March, 2020
  • 17May, 2021
  • 4October, 2019
  • 2February, 2021
  • 1August, 2018
  • 1May, 2020
Available data
  • 31tsv
  • 3bedpe bed3+
  • 2bed bed3+
  • 2ibed
  • 1bam
  • 1fastq
Organism
  • 57Homo sapiens
Biosample type
  • 25tissue
  • 17primary cell
  • 6cell line
  • 5in vitro differentiated cells
  • 4stem cell
Organ
  • 5connective tissue
  • 4eye
  • 3heart
  • 3liver
  • 2adipose tissue
  • 2brain
  • 2intestine
  • 2kidney
  • 2thymus
  • 1adrenal gland
  • 1blood vessel
  • 1bone element
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1musculature of body
  • 1ovary
  • 1pancreas
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1urinary bladder
  • 1vasculature
Project
  • 40AMP
  • 17T1D
Genome assembly (visualization)
  • 4hg19
Lab
  • 40AMP-T2D consortium
  • 17Kyle Gaulton, UCSD
Audit category:
  • 9inconsistent ontology term
BIOSAMPLE
ASSAY

57 results

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Clear Filters
pCHi-C
tissue
islet of Langerhans4
thymus2
Ammon's horn1
adipose tissue1
adrenal gland1
primary cell
CD4-positive, alpha-beta T cell2
B cell1
CD8-positive, alpha-beta T cell1
activated CD4-positive, alpha-beta T cell1
adult endothelial progenitor cell1
cell line
HepG22
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
fibroblast cell line1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
embryonic stem cell1
lymphocyte of B lineage (iPSC)1
white fat cell1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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