Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 1527total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Date released
  • 32March, 2020
  • 17May, 2021
  • 4October, 2019
  • 2February, 2021
  • 1August, 2018
  • 1May, 2020
Available data
  • 31tsv
  • 3bedpe bed3+
  • 2bed bed3+
  • 2ibed
  • 1bam
  • 1fastq
Organism
  • 57Homo sapiens
Biosample type
  • 25tissue
  • 17primary cell
  • 6cell line
  • 5in vitro differentiated cells
  • 4stem cell
Organ
  • 5connective tissue
  • 4eye
  • 3heart
  • 3liver
  • 2adipose tissue
  • 2brain
  • 2intestine
  • 2kidney
  • 2thymus
  • 1adrenal gland
  • 1blood vessel
  • 1bone element
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1musculature of body
  • 1ovary
  • 1pancreas
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1urinary bladder
  • 1vasculature
Project
  • 40AMP
  • 17T1D
Genome assembly (visualization)
  • 4hg19
Lab
  • 40AMP-T2D consortium
  • 17Kyle Gaulton, UCSD
Audit category:
  • 9inconsistent ontology term
type!!
  • Biosample
BIOSAMPLE
ASSAY

57 results

search-icontable-tab-icon
Clear Filters
pCHi-C
tissue
islet of Langerhans4
thymus2
Ammon's horn1
adipose tissue1
adrenal gland1
aorta1
bladder (urinary bladder)1
dorsolateral prefrontal cortex1
esophagus1
gastric (mucosa of stomach)1
heart left ventricle1
heart right ventricle1
liver1
lung1
ovary1
pancreas1
psoas muscle1
right cardiac atrium1
sigmoid colon1
small intestine1
spleen1
primary cell
CD4-positive, alpha-beta T cell2
B cell1
CD8-positive, alpha-beta T cell1
activated CD4-positive, alpha-beta T cell1
adult endothelial progenitor cell1
alternatively activated macrophage1
erythroblast1
inflammatory macrophage1
macrophage1
megakaryocyte1
monocyte1
naive B cel1
naive thymus-derived CD4-positive, alpha-beta T cell1
naive thymus-derived CD8-positive, alpha-beta T cell1
neutrophil1
osteoblast1
cell line
HepG22
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
fibroblast cell line1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
embryonic stem cell1
lymphocyte of B lineage (iPSC)1
white fat cell1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego