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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
1236
total RNA-seq
348
ATAC-seq
263
single cell RNA-seq
192
DNase-seq
86
RNA microarray
62
snATAC-seq
52
pCHi-C
28
WGBS
22
Hi-C
18
small RNA-seq
15
RRBS
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
263
Transcription
Target of assay
3
control
Date released
106
August, 2021
47
September, 2023
40
September, 2020
May, 2022
18
February, 2021
16
April, 2018
15
July, 2018
9
April, 2020
3
July, 2019
3
May, 2023
2
June, 2018
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
139
tsv
68
fastq
36
bam
36
bigWig
19
zippedFastqFolder
13
txt
8
csv
Organism
263
Homo sapiens
Biosample type
179
tissue
84
primary cell
in vitro differentiated cells
Organ
93
heart
80
pancreas
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
Project
155
AMP
52
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
36
GRCh38
36
hg19
Lab
144
AMP-T2D consortium
52
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
6
inconsistent ontology term
5
audit script error
assay_title!
ChIP-seq
biosample_type!
in vitro differentiated cells
month_released!
May, 2022
organ_slims!
epithelium
BIOSAMPLE
ASSAY
263 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
52
pancreatic cell
9
mesenchymal cell
6
pancreatic stellate cell
4
cerebellar granule cell
2
+ See 6 more…
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