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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1071
total RNA-seq
942
ChIP-seq
374
ATAC-seq
230
single cell RNA-seq
195
DNase-seq
RNA microarray
55
pCHi-C
46
snATAC-seq
24
Hi-C
17
WGBS
16
small RNA-seq
15
RRBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
230
Transcription
Target of assay
3
control
Date released
106
August, 2021
47
September, 2023
34
May, 2022
18
September, 2020
9
April, 2020
6
February, 2021
3
December, 2019
3
July, 2019
3
May, 2023
1
February, 2023
Available data
131
tsv
fastq
52
zippedFastqFolder
26
bam
26
bigWig
13
txt
8
csv
Organism
230
Homo sapiens
Biosample type
174
tissue
54
primary cell
2
in vitro differentiated cells
Organ
93
heart
64
kidney
9
lung
6
blood vessel
6
vasculature
pancreas
4
epithelium
3
brain
2
artery
1
connective tissue
1
liver
1
musculature of body
Project
123
AMP
51
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
3
GRCh38
3
hg19
Lab
112
AMP-T2D consortium
51
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
assay_title!
RNA microarray
files.file_type!
fastq
tagAlign bed3+
organ_slims!
pancreas
BIOSAMPLE
ASSAY
230 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
51
cerebellar granule cell
2
Purkinje cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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