Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1273
total RNA-seq
814
ChIP-seq
466
ATAC-seq
232
single cell RNA-seq
170
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
54
pCHi-C
30
Hi-C
15
RRBS
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
232
Transcription
Date released
106
August, 2021
47
September, 2023
34
May, 2022
18
September, 2020
9
April, 2020
6
February, 2021
5
April, 2018
3
December, 2019
3
May, 2023
1
February, 2023
Available data
208
tsv
fastq
103
bam
103
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
232
Homo sapiens
Biosample type
174
tissue
56
primary cell
2
in vitro differentiated cells
Organ
93
heart
64
kidney
9
lung
6
blood vessel
6
vasculature
5
pancreas
4
epithelium
brain
2
artery
1
connective tissue
1
liver
1
musculature of body
Project
125
AMP
51
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
5
GRCh38
5
hg19
Lab
114
AMP-T2D consortium
51
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
assay_title!
small RNA-seq
files.file_type!
fastq
lab.title!
Mark McCarthy, Oxford
organ_slims!
brain
BIOSAMPLE
ASSAY
232 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
51
pancreatic acinar cell
3
pancreatic ductal cell
1
pancreatic stellate cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
Download