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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1733
ChIP-seq
1315
total RNA-seq
402
ATAC-seq
198
single cell RNA-seq
128
DNase-seq
78
snATAC-seq
75
WGBS
48
pCHi-C
26
Hi-C
17
small RNA-seq
16
RRBS
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
198
Transcription
Target of assay
3
control
Date released
August, 2021
49
April, 2018
42
July, 2018
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
2
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
127
fastq
99
bam
99
bigWig
99
tsv
52
zippedFastqFolder
3
csv
Organism
198
Homo sapiens
Biosample type
180
primary cell
18
tissue
Organ
75
pancreas
69
epithelium
kidney
9
lung
4
connective tissue
3
brain
1
heart
1
liver
1
musculature of body
Project
104
AMP
85
HPAP
9
LungMap
Genome assembly (visualization)
99
GRCh38
99
hg19
Lab
104
AMP-T2D consortium
85
Klaus Kaestner, Upenn
9
Xin Sun, UCSD
Audit category:
inconsistent ontology term
2
audit script error
assay_title!
whole genome sequencing assay
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2021
organ_slims!
kidney
BIOSAMPLE
ASSAY
198 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
+ See 11 more…
tissue
lung
9
islet of Langerhans
6
heart
1
liver
1
skeletal muscle tissue
1
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