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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
218
ChIP-seq
152
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
80
Transcription
11
DNA accessibility
Date released
39
April, 2018
37
July, 2018
8
January, 2021
3
August, 2018
2
February, 2023
1
August, 2022
1
June, 2018
Available data
80
bam
80
bigWig
80
tsv
75
fastq
Organism
91
Homo sapiens
Biosample type
74
primary cell
17
tissue
Organ
93
heart
91
pancreas
70
epithelium
70
kidney
19
lung
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
2
musculature of body
1
liver
Project
81
AMP
10
T1D
Genome assembly (visualization)
80
GRCh38
80
hg19
Lab
81
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
1
audit script error
assay_title!
HiChIP
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
91 results
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single cell RNA-seq
snATAC-seq
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 4 more…
tissue
islet of Langerhans
6
7
pancreas
4
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