Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
293
ChIP-seq
221
ATAC-seq
111
single cell RNA-seq
97
total RNA-seq
87
RNA microarray
39
pCHi-C
29
Hi-C
21
RRBS
10
MeRIP-seq
10
WGBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
DNase-seq
3
snDrop-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
111
Transcription
1
DNA sequencing
Date released
99
August, 2021
6
February, 2021
3
December, 2019
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
211
tsv
bam
106
bigWig
100
fastq
8
csv
5
txt
1
vcf
Organism
112
Homo sapiens
Biosample type
107
tissue
2
in vitro differentiated cells
2
primary cell
1
cell line
Organ
93
heart
6
blood vessel
6
kidney
6
vasculature
2
artery
2
liver
1
musculature of body
Project
112
AMP
85
HPAP
47
KPMP
9
LungMap
Lab
111
AMP-T2D consortium
Katalin Susztak, Upenn
1
Bing Ren, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
files.file_type!
bam
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
112 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
6
+ See 12 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
primary cell
pancreatic cell
2
cell line
HepG2
1
See all biosamples
Download