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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
563
ChIP-seq
225
single cell RNA-seq
199
total RNA-seq
195
ATAC-seq
69
WGBS
53
pCHi-C
40
snATAC-seq
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
225
Transcription
Date released
98
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
February, 2021
3
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
100
tsv
52
zippedFastqFolder
24
fastq
2
csv
Organism
225
Homo sapiens
Biosample type
148
tissue
75
primary cell
2
in vitro differentiated cells
Organ
93
heart
48
kidney
6
blood vessel
6
vasculature
2
artery
1
musculature of body
Project
105
AMP
73
HPAP
47
KPMP
LungMap
Genome assembly (visualization)
106
GRCh38
hg19
Lab
105
AMP-T2D consortium
73
Klaus Kaestner, Upenn
47
KPMP
Katalin Susztak, Upenn
Audit category:
2
audit script error
2
inconsistent ontology term
assembly!
hg19
award.project!
LungMap
lab.title!
Katalin Susztak, Upenn
month_released!
February, 2021
BIOSAMPLE
ASSAY
225 results
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single cell RNA-seq
tissue
kidney
48
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
primary cell
Langerhans cell
73
pancreatic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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