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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
566
ChIP-seq
231
ATAC-seq
222
total RNA-seq
221
single cell RNA-seq
87
RNA microarray
62
snATAC-seq
53
pCHi-C
34
WGBS
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
221
Transcription
Date released
106
August, 2021
47
September, 2023
40
September, 2020
May, 2022
12
February, 2021
9
April, 2020
3
December, 2019
3
May, 2023
1
February, 2023
Available data
105
tsv
36
fastq
19
zippedFastqFolder
13
txt
csv
Organism
221
Homo sapiens
Biosample type
167
tissue
52
primary cell
2
in vitro differentiated cells
Organ
93
heart
59
kidney
9
lung
6
blood vessel
6
vasculature
2
artery
Project
113
AMP
52
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
106
GRCh38
hg19
Lab
102
AMP-T2D consortium
52
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
2
audit script error
2
inconsistent ontology term
assembly!
hg19
files.file_type!
csv
month_released!
May, 2022
BIOSAMPLE
ASSAY
221 results
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single cell RNA-seq
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
primary cell
Langerhans cell
52
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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