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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1397
total RNA-seq
1261
ChIP-seq
489
ATAC-seq
355
single cell RNA-seq
208
DNase-seq
75
WGBS
55
snATAC-seq
48
pCHi-C
25
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
355
Transcription
Target of assay
3
control
Date released
106
August, 2021
49
April, 2018
47
September, 2023
42
July, 2018
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
3
May, 2023
2
June, 2018
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
197
tsv
127
fastq
99
bam
99
bigWig
52
zippedFastqFolder
8
txt
3
csv
Organism
355
Homo sapiens
Biosample type
180
primary cell
175
tissue
Organ
93
heart
75
pancreas
69
epithelium
59
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
214
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
99
GRCh38
99
hg19
Lab
203
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
355 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
+ See 11 more…
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
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