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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1418
total RNA-seq
477
ATAC-seq
274
single cell RNA-seq
180
DNase-seq
85
RNA microarray
55
pCHi-C
34
snATAC-seq
28
WGBS
27
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
274
Transcription
Date released
106
August, 2021
49
April, 2018
48
July, 2018
47
September, 2023
9
April, 2020
3
August, 2018
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2021
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
201
tsv
103
bam
103
bigWig
100
fastq
8
txt
3
csv
Organism
274
Homo sapiens
Biosample type
175
tissue
99
primary cell
Organ
93
heart
80
pancreas
70
epithelium
59
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
brain
2
artery
1
liver
1
musculature of body
Project
218
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
103
GRCh38
103
hg19
Lab
207
AMP-T2D consortium
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
inconsistent replicate
lab.title!
Klaus Kaestner, Upenn
organ_slims!
brain
BIOSAMPLE
ASSAY
274 results
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single cell RNA-seq
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 11 more…
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