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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1199
total RNA-seq
971
ChIP-seq
291
ATAC-seq
200
DNase-seq
121
single cell RNA-seq
84
RNA microarray
58
WGBS
56
pCHi-C
47
snATAC-seq
26
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
121
Transcription
Target of assay
3
control
Date released
August, 2021
47
September, 2023
34
May, 2022
18
September, 2020
9
April, 2020
5
April, 2018
3
July, 2019
3
May, 2023
1
December, 2019
1
February, 2021
February, 2023
Available data
fastq
106
bam
106
bigWig
106
tsv
52
zippedFastqFolder
3
csv
Organism
121
Homo sapiens
Biosample type
62
tissue
59
primary cell
Organ
51
kidney
9
lung
5
pancreas
4
epithelium
3
brain
1
connective tissue
1
liver
1
musculature of body
Project
51
HPAP
47
KPMP
14
AMP
9
LungMap
Genome assembly (visualization)
8
GRCh38
8
hg19
Lab
51
Klaus Kaestner, Upenn
47
KPMP
11
AMP-T2D consortium
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
audit script error
2
inconsistent ontology term
audit.ERROR.category!
audit script error
files.file_type!
fastq
month_released!
August, 2021
February, 2023
BIOSAMPLE
ASSAY
121 results
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single cell RNA-seq
tissue
kidney
51
lung
9
liver
1
skeletal muscle tissue
1
primary cell
Langerhans cell
51
pancreatic acinar cell
3
cerebellar granule cell
2
Purkinje cell
1
pancreatic ductal cell
1
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