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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1280
total RNA-seq
1014
ChIP-seq
470
ATAC-seq
228
single cell RNA-seq
200
DNase-seq
85
RNA microarray
58
WGBS
56
pCHi-C
55
snATAC-seq
29
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
228
Transcription
Target of assay
3
control
Date released
106
August, 2021
47
September, 2023
34
May, 2022
18
September, 2020
9
April, 2020
5
April, 2018
3
July, 2019
3
May, 2023
1
December, 2019
1
February, 2021
1
February, 2023
Available data
204
tsv
fastq
106
bam
106
bigWig
52
zippedFastqFolder
8
txt
3
csv
Organism
228
Homo sapiens
Biosample type
169
tissue
59
primary cell
Organ
93
heart
59
kidney
9
lung
6
blood vessel
6
vasculature
5
pancreas
4
epithelium
3
brain
2
artery
1
connective tissue
1
liver
1
musculature of body
Project
121
AMP
51
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
8
GRCh38
8
hg19
Lab
110
AMP-T2D consortium
51
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
audit script error
2
inconsistent ontology term
audit.ERROR.category!
audit script error
files.file_type!
fastq
organ_slims!
embryo
BIOSAMPLE
ASSAY
228 results
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single cell RNA-seq
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
51
pancreatic acinar cell
3
cerebellar granule cell
2
Purkinje cell
1
pancreatic ductal cell
1
+ See 1 more…
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