Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1849
ChIP-seq
1464
total RNA-seq
456
ATAC-seq
351
single cell RNA-seq
212
DNase-seq
85
RNA microarray
75
WGBS
55
pCHi-C
49
snATAC-seq
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
4
Capture-C
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
351
Transcription
Target of assay
3
control
Date released
98
August, 2021
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
3
June, 2018
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
204
tsv
134
fastq
106
bam
106
bigWig
52
zippedFastqFolder
3
csv
Organism
351
Homo sapiens
Biosample type
187
primary cell
164
tissue
Organ
93
heart
80
pancreas
70
epithelium
48
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
210
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
210
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
files.file_type!
ibed
lab.title!
Katalin Susztak, Upenn
organ_slims!
embryo
BIOSAMPLE
ASSAY
351 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
48
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
See all biosamples
Download