Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1692
ChIP-seq
1206
total RNA-seq
328
ATAC-seq
292
single cell RNA-seq
193
DNase-seq
85
RNA microarray
56
pCHi-C
55
snATAC-seq
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
292
Transcription
Target of assay
3
control
Date released
106
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
16
April, 2018
15
July, 2018
13
February, 2021
9
April, 2020
3
July, 2019
3
May, 2023
2
June, 2018
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
134
tsv
68
fastq
52
zippedFastqFolder
36
bam
36
bigWig
8
txt
3
csv
Organism
292
Homo sapiens
Biosample type
175
tissue
117
primary cell
Organ
93
heart
80
pancreas
epithelium
59
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
151
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
36
GRCh38
36
hg19
Lab
140
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
8
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
May, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
292 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
primary cell
Langerhans cell
85
pancreatic cell
9
mesenchymal cell
6
pancreatic stellate cell
4
cerebellar granule cell
2
+ See 6 more…
See all biosamples
Download