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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
ATAC-seq
156
ChIP-seq
123
total RNA-seq
59
single cell RNA-seq
41
WGBS
29
snATAC-seq
27
DNase-seq
16
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
59
Transcription
Target of assay
3
control
Date released
33
May, 2022
18
September, 2020
5
April, 2018
3
July, 2019
Available data
fastq
93
bam
93
bigWig
93
tsv
52
zippedFastqFolder
2
csv
Organism
59
Homo sapiens
Biosample type
68
tissue
59
primary cell
Organ
5
pancreas
4
epithelium
3
brain
1
connective tissue
Project
51
HPAP
8
AMP
Genome assembly (visualization)
8
GRCh38
8
hg19
Lab
51
Klaus Kaestner, Upenn
8
AMP-T2D consortium
audit.ERROR.category!
inconsistent ontology term
files.file_type!
fastq
month_released!
August, 2021
BIOSAMPLE
ASSAY
59 results
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single cell RNA-seq
primary cell
Langerhans cell
51
pancreatic acinar cell
3
cerebellar granule cell
2
Purkinje cell
1
pancreatic ductal cell
1
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