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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1812
ChIP-seq
1277
total RNA-seq
489
ATAC-seq
318
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
19
RRBS
18
small RNA-seq
11
Hi-C
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
318
Transcription
Target of assay
3
control
Date released
106
August, 2021
49
April, 2018
47
September, 2023
July, 2018
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
3
May, 2023
2
June, 2018
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
160
tsv
85
fastq
57
bam
57
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
318
Homo sapiens
Biosample type
180
tissue
138
primary cell
Organ
93
heart
64
kidney
43
pancreas
37
epithelium
9
lung
6
blood vessel
6
vasculature
3
brain
2
artery
2
connective tissue
1
liver
1
musculature of body
Project
177
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
57
GRCh38
57
hg19
Lab
166
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
hic
month_released!
July, 2018
BIOSAMPLE
ASSAY
318 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
primary cell
Langerhans cell
85
pancreatic acinar cell
7
pancreatic delta cell
7
pancreatic ductal cell
7
pancreatic cell
6
+ See 8 more…
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