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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1769
ChIP-seq
1307
total RNA-seq
410
ATAC-seq
211
single cell RNA-seq
208
DNase-seq
78
snATAC-seq
75
WGBS
47
pCHi-C
26
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RNA microarray
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
211
Transcription
Target of assay
3
control
Date released
August, 2021
49
April, 2018
47
September, 2023
42
July, 2018
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
August, 2018
3
July, 2019
3
May, 2023
2
June, 2018
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
102
fastq
101
tsv
96
bam
96
bigWig
33
zippedFastqFolder
8
csv
5
txt
Organism
211
Homo sapiens
Biosample type
137
primary cell
74
tissue
Organ
72
pancreas
66
epithelium
56
kidney
9
lung
4
connective tissue
3
brain
1
heart
1
liver
1
musculature of body
Project
110
AMP
47
KPMP
45
HPAP
9
LungMap
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
107
AMP-T2D consortium
47
KPMP
45
Klaus Kaestner, Upenn
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
7
audit script error
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2018
August, 2021
September, 2020
BIOSAMPLE
ASSAY
211 results
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single cell RNA-seq
primary cell
Langerhans cell
45
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic acinar cell
10
pancreatic alpha cell
10
+ See 11 more…
tissue
kidney
56
lung
9
islet of Langerhans
6
heart
1
liver
1
+ See 1 more…
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