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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1797
ChIP-seq
896
total RNA-seq
467
ATAC-seq
342
single cell RNA-seq
208
DNase-seq
69
WGBS
56
snATAC-seq
46
pCHi-C
29
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
RNA microarray
1
DNAme array
1
whole genome sequencing assay
Assay category
342
Transcription
Target of assay
3
control
Date released
106
August, 2021
49
April, 2018
47
September, 2023
42
July, 2018
40
September, 2020
34
May, 2022
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
3
May, 2023
2
June, 2018
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
197
tsv
115
fastq
99
bam
99
bigWig
52
zippedFastqFolder
8
txt
2
csv
Organism
342
Homo sapiens
Biosample type
174
tissue
168
primary cell
Organ
93
heart
75
pancreas
69
epithelium
59
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
musculature of body
Project
213
AMP
73
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
99
GRCh38
99
hg19
Lab
202
AMP-T2D consortium
73
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
inconsistent ontology term
2
audit script error
audit.ERROR.category!
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
342 results
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single cell RNA-seq
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
73
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
+ See 11 more…
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